MIND Informatics develops and applies integrative computational methods in biomedical and brain research, working with leading clinicians and researchers to understand and cure neurological disorders.

Publications

Export 51 results:
Author Title Type [ Year(Asc)]
2010
Das S, Rogan M, Kawadler H, Corlosquet S, Brin S, Clark T. PD Online: a case study in scientific collaboration on the Web. In: Workshop on the Future of the Web for Collaborative Science, 19th International World Wide Web Conference, Raleigh, North Carolina USA - April 26-30, 2010. 2010
Das S, Rogan M, Kawadler H, Corlosquet S, Brin S, Clark T. PD Online: a case study in scientific collaboration on the Web [Internet]. In: Workshop on the Future of the Web for Collaborative Science, 19th International World Wide Web Conference. Raleigh, North Carolina USA: 2010Available from: http://imageweb.zoo.ox.ac.uk/pub/2010/Proceedings/FWCS2010/02/Paper2.pdf
Dumontier M, Anderson B, Batchelor C, Domarew C, Jentsch A, Luciano J, Pichler E, Prud’hommeaux E, Whetzel P, Bodenreider O, Clark T, Harland L, Kashyap V, Kos P, Kozlovsky J, McGurk J, Ogbuji C, Samwald M, Schriml L, Tonatello P, Zhao J, Stephens S. Translational Medicine Ontology: Driving personalized medicine by bridging the gap from bedside to bench. In: Bio-Ontologies 2010, July 9-10 2010, Boston MA. 2010
2009
Das S, Girard L, Green T, Weitzman L, Lewis-Bowen A, Clark T. Building Biomedical Web Communities Using a Semantically Aware Content Management System. Brief Bioinform 2009;10(2):129-38.
Corlosquet S, R D, Clark T, Polleres A, Decker S. Produce and Consume Linked Data with Drupal! [Internet]. In: 8th International Semantic Web Conference (ISWC 2009); October 25-29, 2009, Washington DC. 2009Available from: http://openspring.net/sites/openspring.net/files/corl-etal-2009iswc.pdf
Corlosquet S, Delbru R, Clark T, Polleres A, Decker S. Produce and Consume Linked Data with Drupal [Internet]. In: 8th International Semantic Web Conference (ISWC 2009). Washington DC: 2009Available from: http://openspring.net/sites/openspring.net/files/corl-etal-2009iswc.pdf
Das S, Goetz M, Girard L, Clark T. Scientific Publications on Web 3.0 [Internet]. In: 13th International Conference on Electronic Publishing (ELPUB 2009). Milan, Italy: 2009Available from: http://elpub.scix.net/cgi-bin/works/Show?149_elpub2009
Groza T, Handschuh S, Clark T, Shum SB. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Washington DC. 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Groza T, Handschuh S, Clark T, Shum SBuckingham, de Waard A. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Passant A, Ciccarese P, Breslin J, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Washington DC. 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
Passant A, Ciccarese P, Breslin JG, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
Carusi A, Clark T, M Marshall S. Web Semantics in Action: Web 3.0 in e-Science. In: 5th IEEE International Conference on e-Science. Oxford, UK: 2009
2007
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, M Marshall S, Ogbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung K-H. Advancing translational research with the Semantic Web. BMC Bioinformatics 2007;8 Suppl 3:S2.
Kinoshita J, Clark T. Alzforum. Methods Mol Biol 2007;401:365-81.
Clark T, Kinoshita J. Alzforum and SWAN: The Present and Future of Scientific Web Communities. Brief Bioinform 2007;8(3):163-71.
Lam HYK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung K-H. AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinformatics 2007;8 Suppl 3:S4.
Cantuti-Castelvetri I, Keller-McGandy C, Bouzou B, Asteris G, Clark T, Frosch MP, Standaert DG. Effects of Gender on Nigral Gene Expression and Parkinson Disease. Neurobiol Dis 2007;26(3):606-14.
Sadri-Vakili G, Bouzou B, Benn CL, Kim M-O, Chawla P, Overland RP, Glajch KE, Xia E, Qiu Z, Hersch SM, Clark T, Yohrling GJ, Cha J-HJ. Histones Associated with Downregulated Genes are Hypo-acetylated in Huntington's Disease Models. Hum Mol Genet 2007;16(11):1293-306.
Clark T. Knowledge Integration in Biomedicine: Technology and Community. Brief Bioinform 2007;
Ciccarese P, Wu E, Clark T. An Overview of the SWAN 1.0 Discourse Ontology [Internet]. In: Workshop on Health Care and Life Sciences Data Integration for the Semantic Web, WWW2007. 16th International World Wide Web Conference. Banff, Canada: 2007Available from: http://www2007.org/workshops/paper_145.pdf

Pages