MIND Informatics develops and applies integrative computational methods in biomedical and brain research, working with leading clinicians and researchers to understand and cure neurological disorders.

Publications

Export 51 results:
Author Title Type [ Year(Desc)]
2007
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, M Marshall S, Ogbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung K-H. Advancing translational research with the Semantic Web. BMC Bioinformatics 2007;8 Suppl 3:S2.
Kinoshita J, Clark T. Alzforum. Methods Mol Biol 2007;401:365-81.
Clark T, Kinoshita J. Alzforum and SWAN: The Present and Future of Scientific Web Communities. Brief Bioinform 2007;8(3):163-71.
Lam HYK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung K-H. AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinformatics 2007;8 Suppl 3:S4.
Cantuti-Castelvetri I, Keller-McGandy C, Bouzou B, Asteris G, Clark T, Frosch MP, Standaert DG. Effects of Gender on Nigral Gene Expression and Parkinson Disease. Neurobiol Dis 2007;26(3):606-14.
Sadri-Vakili G, Bouzou B, Benn CL, Kim M-O, Chawla P, Overland RP, Glajch KE, Xia E, Qiu Z, Hersch SM, Clark T, Yohrling GJ, Cha J-HJ. Histones Associated with Downregulated Genes are Hypo-acetylated in Huntington's Disease Models. Hum Mol Genet 2007;16(11):1293-306.
Clark T. Knowledge Integration in Biomedicine: Technology and Community. Brief Bioinform 2007;
Ciccarese P, Wu E, Clark T. An Overview of the SWAN 1.0 Discourse Ontology [Internet]. In: Workshop on Health Care and Life Sciences Data Integration for the Semantic Web, WWW2007. 16th International World Wide Web Conference. Banff, Canada: 2007Available from: http://www2007.org/workshops/paper_145.pdf
2009
Das S, Girard L, Green T, Weitzman L, Lewis-Bowen A, Clark T. Building Biomedical Web Communities Using a Semantically Aware Content Management System. Brief Bioinform 2009;10(2):129-38.
Corlosquet S, Delbru R, Clark T, Polleres A, Decker S. Produce and Consume Linked Data with Drupal [Internet]. In: 8th International Semantic Web Conference (ISWC 2009). Washington DC: 2009Available from: http://openspring.net/sites/openspring.net/files/corl-etal-2009iswc.pdf
Corlosquet S, R D, Clark T, Polleres A, Decker S. Produce and Consume Linked Data with Drupal! [Internet]. In: 8th International Semantic Web Conference (ISWC 2009); October 25-29, 2009, Washington DC. 2009Available from: http://openspring.net/sites/openspring.net/files/corl-etal-2009iswc.pdf
Das S, Goetz M, Girard L, Clark T. Scientific Publications on Web 3.0 [Internet]. In: 13th International Conference on Electronic Publishing (ELPUB 2009). Milan, Italy: 2009Available from: http://elpub.scix.net/cgi-bin/works/Show?149_elpub2009
Groza T, Handschuh S, Clark T, Shum SBuckingham, de Waard A. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Groza T, Handschuh S, Clark T, Shum SB. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Washington DC. 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Passant A, Ciccarese P, Breslin J, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Washington DC. 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
Passant A, Ciccarese P, Breslin JG, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
Carusi A, Clark T, M Marshall S. Web Semantics in Action: Web 3.0 in e-Science. In: 5th IEEE International Conference on e-Science. Oxford, UK: 2009
2010
Ciccarese P, Ocana M, Das S, Clark T. AO: An Open Annotation Ontology for Science on the Web. In: Bio-Ontologies 2010, July 9-10 2010, Boston MA. 2010
Das S, Rogan M, Kawadler H, Corlosquet S, Brin S, Clark T. PD Online: a case study in scientific collaboration on the Web [Internet]. In: Workshop on the Future of the Web for Collaborative Science, 19th International World Wide Web Conference. Raleigh, North Carolina USA: 2010Available from: http://imageweb.zoo.ox.ac.uk/pub/2010/Proceedings/FWCS2010/02/Paper2.pdf

Pages