MIND Informatics develops and applies integrative computational methods in biomedical and brain research, working with leading clinicians and researchers to understand and cure neurological disorders.


Ciccarese P, Shotton D, Peroni S, Clark T. CiTO + SWAN: The Web Semantics of Bibliographic Records, Citations, Evidence and Discourse Relationships. [Internet]. Semantic Web Journal 2012;Available from: http://www.semantic-web-journal.net/system/files/swj175_1.pdf
McFarland KN, Das S, Sun TTing, Leyfer D, Xia E, Sangrey GR, Kuhn A, Luthi-Carter R, Clark T, Sadri-Vakili G, Cha J-HJ. Genome-wide histone acetylation is altered in a transgenic mouse model of Huntington's disease. PLoS One 2012;7(7):e41423.
Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database (Oxford) 2012;2012:bas005.
Ciccarese P, Ocana M, Clark T. Open semantic annotation of scientific publications using DOMEO. J Biomed Semantics 2012;3 Suppl 1:S1.
Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bougueleret L, Burns G, Chapman B, Clark T, Coleman L-A, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Sui SJHo, Laederach A, Liang S, Marshall S, McGrath A, Merrill E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios I, Hide W. Toward interoperable bioscience data. Nat Genet 2012;44(2):121-6.
Das S, Rogan M, Kawadler H, Corlosquet S, Brin S, Clark T. PD Online: a case study in scientific collaboration on the Web [Internet]. In: Workshop on the Future of the Web for Collaborative Science, 19th International World Wide Web Conference. Raleigh, North Carolina USA: 2010Available from: http://imageweb.zoo.ox.ac.uk/pub/2010/Proceedings/FWCS2010/02/Paper2.pdf
Das S, Girard L, Green T, Weitzman L, Lewis-Bowen A, Clark T. Building Biomedical Web Communities Using a Semantically Aware Content Management System. Brief Bioinform 2009;10(2):129-38.
Corlosquet S, Delbru R, Clark T, Polleres A, Decker S. Produce and Consume Linked Data with Drupal [Internet]. In: 8th International Semantic Web Conference (ISWC 2009). Washington DC: 2009Available from: http://openspring.net/sites/openspring.net/files/corl-etal-2009iswc.pdf
Das S, Goetz M, Girard L, Clark T. Scientific Publications on Web 3.0 [Internet]. In: 13th International Conference on Electronic Publishing (ELPUB 2009). Milan, Italy: 2009Available from: http://elpub.scix.net/cgi-bin/works/Show?149_elpub2009
Groza T, Handschuh S, Clark T, Shum SBuckingham, de Waard A. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Passant A, Ciccarese P, Breslin JG, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
Carusi A, Clark T, M Marshall S. Web Semantics in Action: Web 3.0 in e-Science. In: 5th IEEE International Conference on e-Science. Oxford, UK: 2009